org.wallerlab.yoink.service.processor

Class FileClusteringProcessor

java.lang.Object

org.wallerlab.yoink.service.processor.AbstractClusteringProcessor<java.lang.String,Job>

org.wallerlab.yoink.service.processor.FileClusteringProcessor

All Implemented Interfaces:

org.springframework.batch.item.ItemProcessor<java.lang.String,Job>

@Service
public class FileClusteringProcessor
extends AbstractClusteringProcessor<java.lang.String,Job>

This class is to set up and execute clustering.

Field Summary

Fields

Modifier and Type	Field and Description
protected static org.apache.commons.logging.Log	log
protected RegionizerMath<java.util.Map<Region.Name,Region>,MolecularSystem>	regionizerServiceStarting

Constructor Summary

Constructors

Constructor and Description
FileClusteringProcessor()

Method Summary

Modifier and Type	Method and Description
protected Job	buildAndExecute(java.lang.String input)
Job	process(java.lang.String input) read in a list of requests and execute them.

Methods inherited from class org.wallerlab.yoink.service.processor.AbstractClusteringProcessor

executeClustering

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

regionizerServiceStarting

protected RegionizerMath<java.util.Map<Region.Name,Region>,MolecularSystem> regionizerServiceStarting

log

protected static final org.apache.commons.logging.Log log

Constructor Detail

FileClusteringProcessor

public FileClusteringProcessor()

Method Detail

process

public Job process(java.lang.String input)
            throws java.lang.Exception

read in a list of requests and execute them.

Parameters:

input - - a list of files

Returns:

jobs - a list of YoinkJob Job

Throws:

java.lang.Exception

buildAndExecute

protected Job buildAndExecute(java.lang.String input)