org.wallerlab.yoink.api.model.bootstrap

Interface Job<T>

All Known Implementing Classes:

AdaptiveQMMMJob

public interface Job<T>

this interface is for the Job domain model

Method Summary

Modifier and Type	Method and Description
java.util.List<java.util.Set<java.lang.Integer>>	getClusters() get the clustering result
T	getInput() get the value of input in the job
java.util.List<java.util.List<java.lang.Integer>>	getInteractionList() get the interaction pairs
java.util.List<java.lang.Double>	getInteractionWeight() get the weight(strength) of the interaction
MolecularSystem	getMolecularSystem() get the value of molecular system in the job
java.util.Map<JobParameter,java.lang.Object>	getParameters() get the parameters during the job
java.util.Map<java.lang.String,java.lang.Object>	getProperties() get the value of properties in the job.
java.util.Map<Region.Name,Region>	getRegions() get the value of regions in the job
void	setClusters(java.util.List<java.util.Set<java.lang.Integer>> clusters) set the clustering result
void	setInput(T input) set the value of input in the job
void	SetInteractionList(java.util.List<java.util.List<java.lang.Integer>> interactionSet) set the interaction pairs
void	SetInteractionWeight(java.util.List<java.lang.Double> interactionWeight) set the weight(strength) of the interaction
void	setMolecularSystem(MolecularSystem molecularSystem) set the value of molecular system
void	setParameters(java.util.Map<JobParameter,java.lang.Object> parameters) set the value of parameters
void	setProperties(java.util.Map<java.lang.String,java.lang.Object> properties) set the value of properties in the job.
void	setRegions(java.util.Map<Region.Name,Region> regions) set the value of regions in the job

Method Detail

getMolecularSystem

MolecularSystem getMolecularSystem()

get the value of molecular system in the job

Returns:

molecularSystem - MolecularSystem

setMolecularSystem

void setMolecularSystem(MolecularSystem molecularSystem)

set the value of molecular system

Parameters:

molecularSystem - - MolecularSystem

getParameters

java.util.Map<JobParameter,java.lang.Object> getParameters()

get the parameters during the job

Returns:

a Map. - JobParameter as key, Object as value

setParameters

void setParameters(java.util.Map<JobParameter,java.lang.Object> parameters)

set the value of parameters

Parameters:

parameters - , a Map, - JobParameter as key, Object as value

getRegions

java.util.Map<Region.Name,Region> getRegions()

get the value of regions in the job

Returns:

a Map. - Region.Name as key,Region as value.

setRegions

void setRegions(java.util.Map<Region.Name,Region> regions)

set the value of regions in the job

Parameters:

regions - ,a Map. - Region.Name as key,Region as value.

getInput

T getInput()

get the value of input in the job

Returns:

the specified type input

setInput

void setInput(T input)

set the value of input in the job

Parameters:

input - , the input to start a job. eg. it can be a file ,or JAXBElement from a Cml file

getProperties

java.util.Map<java.lang.String,java.lang.Object> getProperties()

get the value of properties in the job.

Returns:

a Map contains the result of job. - String as key, Object as value.

setProperties

void setProperties(java.util.Map<java.lang.String,java.lang.Object> properties)

set the value of properties in the job.

Parameters:

properties - , a Map contains the result of job. - String as key, Object as value.

getInteractionList

java.util.List<java.util.List<java.lang.Integer>> getInteractionList()

get the interaction pairs

Returns:

list of pairs

SetInteractionList

void SetInteractionList(java.util.List<java.util.List<java.lang.Integer>> interactionSet)

set the interaction pairs

Parameters:

interactionSet - after analysis

getInteractionWeight

java.util.List<java.lang.Double> getInteractionWeight()

get the weight(strength) of the interaction

Returns:

list of weights

SetInteractionWeight

void SetInteractionWeight(java.util.List<java.lang.Double> interactionWeight)

set the weight(strength) of the interaction

Parameters:

interactionWeight - weight of interaction

setClusters

void setClusters(java.util.List<java.util.Set<java.lang.Integer>> clusters)

set the clustering result

Parameters:

clusters - set after analysis

getClusters

java.util.List<java.util.Set<java.lang.Integer>> getClusters()

get the clustering result

Returns:

result of clustering