org.wallerlab.yoink.molecular.domain

Class SimpleMolecularSystem

java.lang.Object

org.wallerlab.yoink.molecular.domain.SimpleMolecularSystem

All Implemented Interfaces:

MolecularSystem

public class SimpleMolecularSystem
extends java.lang.Object
implements MolecularSystem

the domain model for molecular system.

Constructor Summary

Constructors

Constructor and Description
SimpleMolecularSystem(java.util.List<Molecule> molecules)

Method Summary

Modifier and Type	Method and Description
java.util.List<Atom>	getAtoms() get all atoms in the molecular system.
java.util.List<Molecule>	getMolecules() get all molecules in molecular system.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleMolecularSystem

public SimpleMolecularSystem(java.util.List<Molecule> molecules)

Method Detail

getAtoms

public java.util.List<Atom> getAtoms()

get all atoms in the molecular system.

Specified by:

getAtoms in interface MolecularSystem

Returns:

a list of atoms, - Atom

getMolecules

public java.util.List<Molecule> getMolecules()

get all molecules in molecular system.

Specified by:

getMolecules in interface MolecularSystem

Returns:

a lsit of molecules, - Molecule