org.wallerlab.yoink.service.processor

Class StringAdaptiveQMMMProcessor

java.lang.Object

org.wallerlab.yoink.service.processor.AbstractAdaptiveQMMMProcessor<java.lang.String,Job>

org.wallerlab.yoink.service.processor.StringAdaptiveQMMMProcessor

All Implemented Interfaces:

org.springframework.batch.item.ItemProcessor<java.lang.String,Job>

@Service
public class StringAdaptiveQMMMProcessor
extends AbstractAdaptiveQMMMProcessor<java.lang.String,Job>

This class is to set up and execute adaptive QM/MM partitioning.

Field Summary

Fields

Modifier and Type	Field and Description
protected static org.apache.commons.logging.Log	log

Fields inherited from class org.wallerlab.yoink.service.processor.AbstractAdaptiveQMMMProcessor

adaptiveQMMMRegionizers, adaptiveQMMMSmoothnerRouter, propertyWrapper, regionizerServiceEnding, regionizerServiceStarting

Constructor Summary

Constructors

Constructor and Description
StringAdaptiveQMMMProcessor()

Method Summary

Modifier and Type	Method and Description
protected Job	buildAndExecute(java.lang.String input)
Job	process(java.lang.String input) read in a list of inputsand execute them.

Methods inherited from class org.wallerlab.yoink.service.processor.AbstractAdaptiveQMMMProcessor

executeQMMMPartitioning, regionize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

protected static final org.apache.commons.logging.Log log

Constructor Detail

StringAdaptiveQMMMProcessor

public StringAdaptiveQMMMProcessor()

Method Detail

process

public Job process(java.lang.String input)
            throws java.lang.Exception

read in a list of inputsand execute them.

Parameters:

input - - a list of files

Returns:

jobs - a list of YoinkJob Job

Throws:

java.lang.Exception - is thrown if could not process

buildAndExecute

protected Job buildAndExecute(java.lang.String input)