org.wallerlab.yoink.service.jobbuilder

Class JobJaxbBuilderImpl

java.lang.Object

org.wallerlab.yoink.service.jobbuilder.AbstractJobBuilder<javax.xml.bind.JAXBElement,javax.xml.bind.JAXBElement>

org.wallerlab.yoink.service.jobbuilder.JobJaxbBuilderImpl

All Implemented Interfaces:

JobBuilder<javax.xml.bind.JAXBElement,javax.xml.bind.JAXBElement>

@Service
public class JobJaxbBuilderImpl
extends AbstractJobBuilder<javax.xml.bind.JAXBElement,javax.xml.bind.JAXBElement>

this class is to read in all inputs (like molecular system and parameters) needed for adaptive QM/MM partitioning.

Field Summary

Fields inherited from class org.wallerlab.yoink.service.jobbuilder.AbstractJobBuilder

molecularSystemTranslator, parameterTranslator

Constructor Summary

Constructors

Constructor and Description
JobJaxbBuilderImpl()

Method Summary

Modifier and Type	Method and Description
Job<javax.xml.bind.JAXBElement>	build(javax.xml.bind.JAXBElement input) read in cml file, and convert it to molecular system and parameters for building a new adaptive qmmm job.

Methods inherited from class org.wallerlab.yoink.service.jobbuilder.AbstractJobBuilder

process, readInMolecularSystem, readInParameters

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

JobJaxbBuilderImpl

public JobJaxbBuilderImpl()

Method Detail

build

public Job<javax.xml.bind.JAXBElement> build(javax.xml.bind.JAXBElement input)

read in cml file, and convert it to molecular system and parameters for building a new adaptive qmmm job.

Specified by:

build in interface JobBuilder<javax.xml.bind.JAXBElement,javax.xml.bind.JAXBElement>

Specified by:

build in class AbstractJobBuilder<javax.xml.bind.JAXBElement,javax.xml.bind.JAXBElement>

Parameters:

input - , the file name to be read

Returns:

job, the new built YoinkJob Job