org.wallerlab.yoink.service

Class DoriClustering

java.lang.Object

org.wallerlab.yoink.service.DoriClustering

All Implemented Interfaces:

Clustering

@Service
public class DoriClustering
extends java.lang.Object
implements Clustering

This class is to build a graph based on DORI interaction(yes or no) and do louvain clustering.

Constructor Summary

Constructors

Constructor and Description
DoriClustering()

Method Summary

Modifier and Type	Method and Description
void	cluster(Job job)
java.util.List<java.util.Set<java.lang.Integer>>	louvainClustering(java.util.List<InteractionTriple<java.lang.Integer>> interactionSet, java.util.Map<JobParameter,java.lang.Object> parameters)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DoriClustering

public DoriClustering()

Method Detail

cluster

public void cluster(Job job)

Specified by:

cluster in interface Clustering

louvainClustering

public java.util.List<java.util.Set<java.lang.Integer>> louvainClustering(java.util.List<InteractionTriple<java.lang.Integer>> interactionSet,
                                                                          java.util.Map<JobParameter,java.lang.Object> parameters)