org.wallerlab.yoink.regionizer.service

Class DensityBasedRegionizer

java.lang.Object

org.wallerlab.yoink.regionizer.service.DensityBasedRegionizer

All Implemented Interfaces:

Regionizer<java.util.Map<Region.Name,Region>,java.util.Map<JobParameter,java.lang.Object>>

@Service
public class DensityBasedRegionizer
extends java.lang.Object
implements Regionizer<java.util.Map<Region.Name,Region>,java.util.Map<JobParameter,java.lang.Object>>

this class is to find adaptive QM core region, adaptive QM region and buffer region busing density based adaptive qm/mm partitioning.

Constructor Summary

Constructors

Constructor and Description
DensityBasedRegionizer()

Method Summary

Modifier and Type	Method and Description
java.util.Map<Region.Name,Region>	regionize(java.util.Map<Region.Name,Region> regions, java.util.Map<JobParameter,java.lang.Object> parameters) execute density based adaptive regionizer by looping over all regionizer components in it

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DensityBasedRegionizer

public DensityBasedRegionizer()

Method Detail

regionize

public java.util.Map<Region.Name,Region> regionize(java.util.Map<Region.Name,Region> regions,
                                                   java.util.Map<JobParameter,java.lang.Object> parameters)

execute density based adaptive regionizer by looping over all regionizer components in it

Specified by:

regionize in interface Regionizer<java.util.Map<Region.Name,Region>,java.util.Map<JobParameter,java.lang.Object>>

Parameters:

regions - , a Map, Region.Name as Key, Region as Value

parameters - -specified argument

Returns:

regions - a list of region Region